Deprecated Methods

Usage

refine(object, ...)

# S4 method for AveragePermutationOrder
refine(object, cutoff, margin = c(1, 2), axes = c(1, 2), n = 30)

# S4 method for BootstrapCA
refine(object, cutoff, margin = 1, axes = c(1, 2))

Arguments

object: A PermutationOrder object (typically returned by seriate_average()).
...: Further arguments to be passed to internal methods.
cutoff: A function that takes a numeric vector as argument and returns a single numeric value (see below).
margin: A length-one numeric vector giving the subscripts which the refinement will be applied over: 1 indicates rows, 2 indicates columns.
axes: An integer vector giving the subscripts of the CA axes to be used.
n: A non-negative integer giving the number of bootstrap replications.

Author

N. Frerebeau