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Plots a rank vs relative abundance diagram.

Usage

plot_rank(object, ...)

# S4 method for matrix
plot_rank(object, log = NULL, facet = FALSE)

Arguments

object

An abundance matrix to be plotted.

...

Further arguments to be passed to internal methods.

log

A character string which contains "x" if the x axis is to be logarithmic, "y" if the y axis is to be logarithmic and "xy" or "yx" if both axes are to be logarithmic (base 10).

facet

A logical scalar: should a matrix of panels defined by case/sample be drawn?

Value

A ggplot2::ggplot object.

References

Magurran, A. E. (1988). Ecological Diversity and its Measurement. Princeton, NJ: Princeton University Press. doi: 10.1007/978-94-015-7358-0 .

See also

Author

N. Frerebeau

Examples

## Abundance matrix
## Coerce datasets to a count matrix (data from Desachy 2004)
data("compiegne", package = "folio")
counts <- as_count(compiegne)

## Plot rank vs abundance
plot_rank(counts)

plot_rank(counts, facet = TRUE)