arkhe 0.5.0
CRAN release: 2022-06-15
New classes and methods
- Add
assign_rownames()
andassign_colnames()
to make a specific row/column the column/row names of adata.frame
. - Add
assert_count()
to validate count data (absolute frequencies/integer). - Add
count()
to count values by rows/columns according to a given predicate. - Add
detect()
to find rows/columns in an array-like object according to a given predicate. - Add
compact()
to remove rows/columns in an array-like object according to a given predicate. - Add
jackknife()
for jackknife estimation. - Add
confidence()
to compute confidence interval for the mean.
arkhe 0.4.0
CRAN release: 2021-09-18
New classes and methods
- Add
replace_Inf()
to replace infinite values in amatrix
-like object. - Add
replace_zero()
to replace zero in amatrix
-like object. - Add
remove_Inf()
to remove infinite values in amatrix
-like object. - Add
assert_*()
andvalidate()
to validate objects. - Add
get_dates()
,set_dates()<-
to extract/replacedates
slot. - Add
get_terminus()
,set_terminus()<-
,get_tpq()
,set_tpq()<-
,get_taq()
,set_taq()<-
to extract/replacetpq
andtaq
slots. - Add
summary()
forAbundanceMatrix
objects.
arkhe 0.3.0
CRAN release: 2021-04-09
New classes and methods
- Add
replace_NA()
to replace missing values. - Add
remove_NA()
,remove_zero()
andremove_empty()
to remove missing values, zeros and empty rows/columns in amatrix
. - Add
get_samples()
,set_samples()<-
,get_groups()
andset_groups()<-
to extract/replacesamples
andgroups
slots.
Bugfixes & changes
- Change
OccurrenceMatrix
inheritance (fromNumericMatrix
toIntegerMatrix
). - Rename
AbundanceMatrix
(ambiguous) toCompositionMatrix
. - Deprecate
as_abundance()
. - Remove
SimilarityMatrix
class. -
as_long()
gained a newreverse
argument.