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SNIP Baseline Estimation

Source: R/AllGenerics.R, R/baseline.R
baseline_snip.Rd

Sensitive Nonlinear Iterative Peak clipping algorithm.

Usage

baseline_snip(x, y, ...)

# S4 method for numeric,numeric
baseline_snip(x, y, LLS = FALSE, decreasing = FALSE, n = 100)

# S4 method for ANY,missing
baseline_snip(x, LLS = FALSE, decreasing = FALSE, n = 100)

Arguments

x, y

A numeric vector. If y is missing, an attempt is made to interpret x in a suitable way (see grDevices::xy.coords()).

...

Currently not used.

LLS

A logical scalar: should the LLS operator be applied on x before employing SNIP algorithm? Only used if method is "SNIP".

decreasing

A logical scalar: should a decreasing clipping window be used?

n

An integer value giving the number of iterations.

Value

Returns a list with two components x and y.

References

Morháč, M., Kliman, J., Matoušek, V., Veselský, M. & Turzo, I. (1997). Background elimination methods for multidimensional gamma-ray spectra. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 401(1), p. 113-132. doi:10.1016/S0168-9002(97)01023-1

Morháč, M. & Matoušek, V. (2008). Peak Clipping Algorithms for Background Estimation in Spectroscopic Data. Applied Spectroscopy, 62(1), p. 91-106. doi:10.1366/000370208783412762

Ryan, C. G., Clayton, E., Griffin, W. L., Sie, S. H. & Cousens, D. R. (1988). SNIP, a statistics-sensitive background treatment for the quantitative analysis of PIXE spectra in geoscience applications. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 34(3), p. 396-402. doi:10.1016/0168-583X(88)90063-8

See also

signal_correct()

Other baseline estimation methods: baseline_asls(), baseline_linear(), baseline_peakfilling(), baseline_polynomial(), baseline_rollingball(), baseline_rubberband()

Author

N. Frerebeau

Examples

## gamma-ray spectrometry
data("BEGe")

## Subset from 2.75 to 200 keV
BEGe <- signal_select(BEGe, from = 3, to = 200)

## Plot spectrum
plot(BEGe, type = "l", xlab = "Energy (keV)", ylab = "Count")

## SNIP baseline
baseline <- baseline_snip(BEGe, LLS = FALSE, decreasing = FALSE, n = 100)

plot(BEGe, type = "l", xlab = "Energy (keV)", ylab = "Count")
lines(baseline, type = "l", col = "red")