Ellipses

Plots ellipses.

Usage

viz_ellipses(x, y, ...)

# S4 method for class 'numeric,numeric'
viz_ellipses(
  x,
  y,
  ...,
  group = NULL,
  type = c("tolerance", "confidence"),
  level = 0.95,
  color = NULL,
  fill = FALSE,
  symbol = FALSE
)

# S4 method for class 'MultivariateAnalysis,missing'
viz_ellipses(
  x,
  ...,
  group = NULL,
  type = c("tolerance", "confidence"),
  level = 0.95,
  color = NULL,
  fill = FALSE,
  symbol = FALSE
)

# S4 method for class 'PCOA,missing'
viz_ellipses(
  x,
  ...,
  group = NULL,
  type = c("tolerance", "confidence"),
  level = 0.95,
  color = NULL,
  fill = FALSE,
  symbol = FALSE
)

Arguments

x, y

A numeric vector. If y is missing, x must be an object from which to wrap observations (a CA, MCA or PCA object).

...

Further graphical parameters to be passed to graphics::polygon().

group

A vector specifying the group an observation belongs to.

type

A character string specifying the ellipse to draw. It must be one of "tolerance" or "confidence"). Any unambiguous substring can be given.

level

A numeric vector specifying the confidence/tolerance level.

color

The colors for borders (will be mapped to group). Ignored if set to FALSE. If NULL, the default color scheme will be used.

fill

The background colors (will be mapped to group). Ignored if set to FALSE.

symbol

A vector of symbols (will be mapped to group). Ignored if set to FALSE.

Value

viz_ellipses()is called for its side-effects: it results in a graphic being displayed. Invisibly returns x.

See also

Other envelopes: viz_confidence(), viz_hull(), viz_tolerance()

Author

N. Frerebeau

Examples

## Load data
data("iris")

## Compute principal components analysis
X <- pca(iris, scale = TRUE, sup_quali = "Species")

## Plot with tolerance ellipses
col <- c("#004488", "#DDAA33", "#BB5566")
viz_rows(X, extra_quali = iris$Species, color = col)
viz_ellipses(
  x = X,
  type = "tolerance",
  level = c(0.68, 0.95),
  group = iris$Species,
  color = col
)