Divides the compositional matrix x into the groups defined by f.
Usage
# S4 method for CompositionMatrix
split(x, f, drop = FALSE, ...)
# S4 method for LogRatio
split(x, f, drop = FALSE, ...)Arguments
- x
A
CompositionMatrixobject.- f
A 'factor' in the sense that
as.factor(f)defines the grouping, or a list of such factors in which case their interaction is used for the grouping (seebase::split()).- drop
A
logicalscalar: should levels that do not occur be dropped?- ...
Currently not used.
Value
A list of CompositionMatrix objects.
See also
Other mutators:
groups,
identifiers,
samples,
subset(),
totals
Examples
## Create a data.frame
X <- data.frame(
samples = c("A", "A", "A", "B", "B", "B", "C", "C", "C"),
groups = c("X", "X", "X", "X", NA, NA, "Y", "Y", "Y"),
Ca = c(7.72, 7.32, 3.11, 7.19, 7.41, 5, 4.18, 1, 4.51),
Fe = c(6.12, 5.88, 5.12, 6.18, 6.02, 7.14, 5.25, 5.28, 5.72),
Na = c(0.97, 1.59, 1.25, 0.86, 0.76, 0.51, 0.75, 0.52, 0.56)
)
## Coerce to a compositional matrix
Y <- as_composition(X)
## Split by group
split(Y, f = get_groups(Y))
#> $X
#> <CompositionMatrix: 4 x 3>
#> Ca Fe Na
#> 1 0.5212694 0.4132343 0.06549629
#> 2 0.4949290 0.3975659 0.10750507
#> 3 0.3280591 0.5400844 0.13185654
#> 4 0.5052706 0.4342937 0.06043570
#>
#> $Y
#> <CompositionMatrix: 3 x 3>
#> Ca Fe Na
#> 7 0.4106090 0.5157171 0.07367387
#> 8 0.1470588 0.7764706 0.07647059
#> 9 0.4179796 0.5301205 0.05189991
#>
## Split by sample
split(Y, f = get_samples(Y))
#> $A
#> <CompositionMatrix: 3 x 3>
#> Ca Fe Na
#> 1 0.5212694 0.4132343 0.06549629
#> 2 0.4949290 0.3975659 0.10750507
#> 3 0.3280591 0.5400844 0.13185654
#>
#> $B
#> <CompositionMatrix: 3 x 3>
#> Ca Fe Na
#> 4 0.5052706 0.4342937 0.06043570
#> 5 0.5221987 0.4242424 0.05355884
#> 6 0.3952569 0.5644269 0.04031621
#>
#> $C
#> <CompositionMatrix: 3 x 3>
#> Ca Fe Na
#> 7 0.4106090 0.5157171 0.07367387
#> 8 0.1470588 0.7764706 0.07647059
#> 9 0.4179796 0.5301205 0.05189991
#>