Package index • tabula

Visualization

matrigraph() pvi(): Matrigraph

plot_bertin(): Bertin Diagram

plot_diceleraas(): Dice-Leraas Diagram

plot_ford(): Ford Diagram

plot_heatmap(): Heatmap

plot_rank(): Rank Plot

plot_spot(): Spot Plot

seriograph() eppm(): Seriograph

Diversity Measures

diversity(): Alpha Diversity

evenness(): Evenness

heterogeneity(): Heterogeneity

occurrence(): Co-Occurrence

plot(<DiversityIndex>,<missing>): Diversity Plot

plot(<RarefactionIndex>,<missing>): Rarefaction Plot

profiles(): Diversity Profiles

rarefaction(): Rarefaction

richness() composition(): Richness

she(): SHE Analysis

similarity(): Similarity

simulate(<DiversityIndex>): Measure Diversity by Comparing to Simulated Assemblages

turnover(): Turnover

Alpha Diversity

index_ace(): Abundance-based Coverage Estimator

index_baxter(): Baxter's Rarefaction

index_berger(): Berger-Parker Dominance Index

index_boone(): Boone Heterogeneity Measure

index_brillouin(): Brillouin Diversity Index.

index_chao1(): Chao1 Estimator

index_chao2(): Chao2 Estimator

index_hurlbert(): Hurlbert's Rarefaction

index_ice(): Incidence-based Coverage Estimator

index_margalef(): Margalef Richness Index

index_mcintosh(): McIntosh Dominance Index.

index_menhinick(): Menhinick Richness Index

index_shannon(): Shannon-Wiener Diversity Index

index_simpson(): Simpson Dominance Index

index_squares(): Squares Estimator

observed() singleton() doubleton(): Number of Observed Species

Beta Diversity

index_binomial(): Binomial Co-Occurrence Assessment

index_brainerd(): Brainerd-Robinson Quantitative Index

index_bray(): Bray-Curtis Similarity

index_cody(): Cody Measure

index_jaccard(): Jaccard Index

index_morisita(): Morisita-Horn Quantitative Index

index_routledge1() index_routledge2() index_routledge3(): Routledge Measures

index_sorensen(): Dice-Sorensen Qualitative Index

index_whittaker(): Whittaker Measure

index_wilson(): Wilson Measure

Statistics

bootstrap(<DiversityIndex>): Bootstrap Estimation

jackknife(<DiversityIndex>): Jackknife Estimation

test_shannon() test_simpson(): Diversity Test

Getters and Setters

as.data.frame(<DiversityIndex>): Coerce to a Data Frame

get_method() labels(<DiversityIndex>) labels(<RarefactionIndex>): Get or Set Parts of an Object

Datasets

aves: Birds Species and Abundances

cantabria: Early Magdalenian Engraved Bones

pueblo: Pueblo IV Period Ceramics

woodland: Trees Incidences